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PHORETIX INTERNATIONAL LIMITED 1d pro software
1d Pro Software, supplied by PHORETIX INTERNATIONAL LIMITED, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/1d+pro+software/1d+pro+software/10__1016_slash_j__idairyj__2024__105894-58-2-1
Average 90 stars, based on 1 article reviews
1d pro software - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Denaturing Gradient Gel Electrophoresis:

Article Title: Analytical methods for assessing antimicrobial activity of nanomaterials in complex media: advances, challenges, and perspectives.
Article Snippet: Finally, DGGE profiles were analyzed using Phoretix 1D Pro software to show bacterial richness. .. Finally, DGGE profiles were analyzed using Phoretix 1D Pro software to show bacterial richness. ..

Article Title: Analytical methods for assessing antimicrobial activity of nanomaterials in complex media: advances, challenges, and perspectives
Article Snippet: Sediment , Pd , Bacterial community , Soil DNA isolation kit, centrifuge, electrophoresis, PCR, shaker, DGGE system, molecular image apparatus, Gelcompar software package, , ~ 5 h , Cell lysis; DNA extraction and purification; amplifying bacterial 16S rRNA genes; calculating relative abundance of genes via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Filter, PCR, MinElute columns, 4001-Rev-B DGGE system, molecular image apparatus, Phoretix 1D Pro software , ~ 5 h , Cell collection and lysis; DNA extraction; amplifying bacterial 16S rRNA genes; calculating bacterial richness via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Lyzozyme and proteinase K kit, centrifuge, electrophoresis, PCR, PCR purification kit, genetic analysis system and software package , > 5 h , Extracting DNA; amplifying bacterial 16S rRNA gene; digesting PCR products; calculating relative abundance of genes; assessing antimicrobial activity based on the changes of the bacterial relative abundance , [ ] .

Software:

Article Title: Analytical methods for assessing antimicrobial activity of nanomaterials in complex media: advances, challenges, and perspectives.
Article Snippet: Finally, DGGE profiles were analyzed using Phoretix 1D Pro software to show bacterial richness. .. Finally, DGGE profiles were analyzed using Phoretix 1D Pro software to show bacterial richness. ..

Article Title: Detection and molecular analysis of Campylobacter ureolyticus in domestic animals
Article Snippet: .. Gel profiles were compared and clustered on the basis of pattern similarity, using Phoretix 1D Pro software, and the obtained dendrogram is presented in Figure . ..

Article Title: Soil Bacterial Community Response to Differences in Agricultural Management along with Seasonal Changes in a Mediterranean Region
Article Snippet: Quantity One software package (Bio-Rad) and Phoretix 1D PRO software (Phoretix International, Newcastle upon Tyne, United Kingdom) were used for CD-DGGE profile analysis. .. The cluster analysis and dendrogram generation were carried out by using the Phoretix 1D Pro software according to the manufacturer’s instructions (Phoretix International, Newcastle upon Tyne, United Kingdom). ..

Article Title: Soil Bacterial Community Response to Differences in Agricultural Management along with Seasonal Changes in a Mediterranean Region
Article Snippet: .. The similarity between the band patterns was calculated using the Dice coefficient and the clustering analysis was performed with the unweighted pair group method with arithmetic averages (UPGMA) to generate a dendrogram by using mathematic averages algorithm programs integral to the Phoretix 1D Pro software. ..

Article Title: Soil Bacterial Community Response to Differences in Agricultural Management along with Seasonal Changes in a Mediterranean Region
Article Snippet: Electrophoresis were carried out for 16 h at 75 mV in 1X TAE buffer at 60°C, stained with 50 μg/ml ethidium bromide for 30 min, destained in water and photographed with the UVIpro Platinum Gel Documentation System (GAS7500/7510; Eppendorf, Cambridge,UK). .. Quantity One software package (Bio-Rad) and Phoretix 1D PRO software (Phoretix International, Newcastle upon Tyne, United Kingdom) were used for CD-DGGE profile analysis. .. The cluster analysis and dendrogram generation were carried out by using the Phoretix 1D Pro software according to the manufacturer’s instructions (Phoretix International, Newcastle upon Tyne, United Kingdom).

Article Title: Analytical methods for assessing antimicrobial activity of nanomaterials in complex media: advances, challenges, and perspectives
Article Snippet: Sediment , Pd , Bacterial community , Soil DNA isolation kit, centrifuge, electrophoresis, PCR, shaker, DGGE system, molecular image apparatus, Gelcompar software package, , ~ 5 h , Cell lysis; DNA extraction and purification; amplifying bacterial 16S rRNA genes; calculating relative abundance of genes via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Filter, PCR, MinElute columns, 4001-Rev-B DGGE system, molecular image apparatus, Phoretix 1D Pro software , ~ 5 h , Cell collection and lysis; DNA extraction; amplifying bacterial 16S rRNA genes; calculating bacterial richness via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Lyzozyme and proteinase K kit, centrifuge, electrophoresis, PCR, PCR purification kit, genetic analysis system and software package , > 5 h , Extracting DNA; amplifying bacterial 16S rRNA gene; digesting PCR products; calculating relative abundance of genes; assessing antimicrobial activity based on the changes of the bacterial relative abundance , [ ] .

Article Title: Culture Media Based on Leaf Strips/Root Segments Create Compatible Host/Organ Setup for in vitro Cultivation of Plant Microbiota
Article Snippet: .. Based on the analysis of distance scores by Phoretix 1D pro software, the constructed dendrogram of endo-phyllosphere is shown in Figure 2. ..

Article Title: Volatilome profile (HS-SPME/GC–MS) and proteolysis in Beyaz peynir (white-brined cheese) made using different probiotic adjunct cultures and ripening under brine or vacuum package systems, and chemometric analysis
Article Snippet: Probiotic Beyaz peynir (white-brined cheese) was manufactured using two different adjunct probiotic bacteria (Lactobacillus acidophilus DSMZ 20079 and Bifidobacterium bifidum DSMZ 20456) and the influence of these bacteria and different packaging systems (vacuum package and under brine) on the changes in the volatilome and proteolysis throughout the ripening was investigated.. Packaging type, addition of the adjunct culture, and ripening time changed the volatilome profile and proteolysis of the cheeses both qualitatively and quantitatively.. A total of 54 volatile compounds and their levels greatly differed among the cheeses depending on the factors studied.

Polymerase Chain Reaction:

Article Title: Analytical methods for assessing antimicrobial activity of nanomaterials in complex media: advances, challenges, and perspectives
Article Snippet: Sediment , Pd , Bacterial community , Soil DNA isolation kit, centrifuge, electrophoresis, PCR, shaker, DGGE system, molecular image apparatus, Gelcompar software package, , ~ 5 h , Cell lysis; DNA extraction and purification; amplifying bacterial 16S rRNA genes; calculating relative abundance of genes via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Filter, PCR, MinElute columns, 4001-Rev-B DGGE system, molecular image apparatus, Phoretix 1D Pro software , ~ 5 h , Cell collection and lysis; DNA extraction; amplifying bacterial 16S rRNA genes; calculating bacterial richness via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Lyzozyme and proteinase K kit, centrifuge, electrophoresis, PCR, PCR purification kit, genetic analysis system and software package , > 5 h , Extracting DNA; amplifying bacterial 16S rRNA gene; digesting PCR products; calculating relative abundance of genes; assessing antimicrobial activity based on the changes of the bacterial relative abundance , [ ] .

Lysis:

Article Title: Analytical methods for assessing antimicrobial activity of nanomaterials in complex media: advances, challenges, and perspectives
Article Snippet: Sediment , Pd , Bacterial community , Soil DNA isolation kit, centrifuge, electrophoresis, PCR, shaker, DGGE system, molecular image apparatus, Gelcompar software package, , ~ 5 h , Cell lysis; DNA extraction and purification; amplifying bacterial 16S rRNA genes; calculating relative abundance of genes via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Filter, PCR, MinElute columns, 4001-Rev-B DGGE system, molecular image apparatus, Phoretix 1D Pro software , ~ 5 h , Cell collection and lysis; DNA extraction; amplifying bacterial 16S rRNA genes; calculating bacterial richness via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Lyzozyme and proteinase K kit, centrifuge, electrophoresis, PCR, PCR purification kit, genetic analysis system and software package , > 5 h , Extracting DNA; amplifying bacterial 16S rRNA gene; digesting PCR products; calculating relative abundance of genes; assessing antimicrobial activity based on the changes of the bacterial relative abundance , [ ] .

DNA Extraction:

Article Title: Analytical methods for assessing antimicrobial activity of nanomaterials in complex media: advances, challenges, and perspectives
Article Snippet: Sediment , Pd , Bacterial community , Soil DNA isolation kit, centrifuge, electrophoresis, PCR, shaker, DGGE system, molecular image apparatus, Gelcompar software package, , ~ 5 h , Cell lysis; DNA extraction and purification; amplifying bacterial 16S rRNA genes; calculating relative abundance of genes via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Filter, PCR, MinElute columns, 4001-Rev-B DGGE system, molecular image apparatus, Phoretix 1D Pro software , ~ 5 h , Cell collection and lysis; DNA extraction; amplifying bacterial 16S rRNA genes; calculating bacterial richness via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Lyzozyme and proteinase K kit, centrifuge, electrophoresis, PCR, PCR purification kit, genetic analysis system and software package , > 5 h , Extracting DNA; amplifying bacterial 16S rRNA gene; digesting PCR products; calculating relative abundance of genes; assessing antimicrobial activity based on the changes of the bacterial relative abundance , [ ] .

Activity Assay:

Article Title: Analytical methods for assessing antimicrobial activity of nanomaterials in complex media: advances, challenges, and perspectives
Article Snippet: Sediment , Pd , Bacterial community , Soil DNA isolation kit, centrifuge, electrophoresis, PCR, shaker, DGGE system, molecular image apparatus, Gelcompar software package, , ~ 5 h , Cell lysis; DNA extraction and purification; amplifying bacterial 16S rRNA genes; calculating relative abundance of genes via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Filter, PCR, MinElute columns, 4001-Rev-B DGGE system, molecular image apparatus, Phoretix 1D Pro software , ~ 5 h , Cell collection and lysis; DNA extraction; amplifying bacterial 16S rRNA genes; calculating bacterial richness via DGGE analysis; assessing antimicrobial activity based on the changes of the bacterial structural and diversity , [ ] . .. Seawater , Ag , Bacterial community , Lyzozyme and proteinase K kit, centrifuge, electrophoresis, PCR, PCR purification kit, genetic analysis system and software package , > 5 h , Extracting DNA; amplifying bacterial 16S rRNA gene; digesting PCR products; calculating relative abundance of genes; assessing antimicrobial activity based on the changes of the bacterial relative abundance , [ ] .

Construct:

Article Title: Culture Media Based on Leaf Strips/Root Segments Create Compatible Host/Organ Setup for in vitro Cultivation of Plant Microbiota
Article Snippet: .. Based on the analysis of distance scores by Phoretix 1D pro software, the constructed dendrogram of endo-phyllosphere is shown in Figure 2. ..



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